Please send all iLab inquiries to ilabadmin@augusta.edu
Please acknowledge Cores in any publications supported by their services. This supports grant and institutional funding of the Core.
(hide this warning on this page)In the era of Big Data, increasing number of cutting-edge biomedical researchers deal with terabytes of data with 20-30 software packages. Our goal is to provide the hub for interdisciplinary research in genomics, proteomics, and computational biology to the Augusta University community. Provided with diverse background and through experience in bioinformatics of our research faculty, we aim to catalyze the collaboration across the campus for high impact studies.
Services:
Analysis: Analysis of high-throughput data including genomics, proteomics, metabolomics, and microbiome data. For standard analysis pipeline.
Consulting: Project development, study design, and tailored analysis beyond standard analysis pipeline.
Training: Training session in bioinformatics topics
Ashok Sharma | Associate Professor | Core Director | 706-721-6335 | assharma@augusta.edu |
Richard McIndoe | Professor | CBGM Director | 706-721-3542 | rmcindoe@augusta.edu |
Kevin Coombes | Professor | GCC Core Director | 706-721-7657 | kcoombes@augusta.edu |
Hours | Location |
9AM-5PM M-F |
1120 15th Street, CA-4100 |
Name | Role | Phone | Location | |
---|---|---|---|---|
Ashok Sharma, PhD |
Associate Professor
|
706-721-6335
|
assharma@augusta.edu
|
CA4094
|
Tae Jin Lee |
Assistant Professor
|
706-721-3515
|
talee@augusta.edu
|
CA2007
|
Arnoneel Sinha |
Postdoctoral Fellow
|
706-721-3515
|
arsinha@augusta.edu
|
CA2007
|
Kevin Coombes |
Professor
|
706-721-7657
|
kcoombes@augusta.edu
|
|
Sergei Bombin |
Assistant Research Scientist
|
sbombin@augusta.edu
|
CN3139
|
|
Diego Antonio Fernandez Fuentes |
Data Analyst
|
706-729-2419
|
DieFernandez@augusta.edu
|
CN139
|
Dhwani Sangani |
Research Programmer Analyst
|
706-721-5495
|
dsangani@augusta.edu
|
CA4147
|
Service list |
► RNA-Seq (2) | |||
Name | Description | Price | |
---|---|---|---|
Bulk RNA-Seq (Sample Size 1-20) |
• Differential expression analysis |
Inquire | |
Bulk RNA-Seq ( Sample Size 41-60) |
• Differential expression analysis |
Inquire | |
► Proteomics Analysis (3) | |||
Name | Description | Price | |
Bottom-up proteomics / Top-down proteomics (Sample size 1-20) |
• Differential expression analysis |
Inquire | |
Bottom-up proteomics / Top-down proteomics (Sample size 21-40) |
• Differential expression analysis |
Inquire | |
Bottom-up proteomics / Top-down proteomics / Glyco-proteomics (Sample size 41-60) |
• Differential expression analysis |
Inquire | |
► scRNA-Seq Analysis (3) | |||
Name | Description | Price | |
Single-cell RNA-Seq ((sample Size 01-05)/subject) |
|
Internal
$1,500.00
each
External $2,250.00 each Commercial $3,000.00 each |
|
Single-cell RNA-Seq ((sample Size 06-10)/subject) |
|
Internal
$2,000.00
each
External $3,000.00 each Commercial $4,000.00 each |
|
Single-cell RNA-Seq ((sample Size 11-20)/subject) |
|
Internal
$2,500.00
each
External $3,750.00 each Commercial $5,000.00 each |
|
► Micobiome Analysis (3) | |||
Name | Description | Price | |
16S rRNA sequencing / 18S rRNA sequencing (Sample size 1-20) |
• Differential taxa abundance in multivariate models |
Inquire | |
16S rRNA sequencing / 18S rRNA sequencing (Sample size 21-40) |
• Differential taxa abundance in multivariate models |
Inquire | |
16S rRNA sequencing / 18S rRNA sequencing (Sample size 41-60) |
• Differential taxa abundance in multivariate models |
Inquire | |
► Metabolic Analysis (3) | |||
Name | Description | Price | |
GC-MS/MS / Luminex (Sample size 1-20) |
• Differential expression analysis |
Inquire | |
GC-MS/MS / Luminex (Sample size 21-40) |
• Differential expression analysis |
Inquire | |
GC-MS/MS / Luminex (Sample size 41-60) |
• Differential expression analysis |
Inquire | |
► CHIP-Seq Analysis (3) | |||
Name | Description | Price | |
Transcription factor binding / Histone modifications (Sample size 1-20) |
• Peak calling |
Inquire | |
Transcription factor binding / Histone modifications (Sample size 21-40) |
• Peak calling |
Inquire | |
Transcription factor binding / Histone modifications (Sample size 41-60) |
• Peak calling |
Inquire | |
► CLIP-Seq Analysis (3) | |||
Name | Description | Price | |
RNAs-protein interaction / RNA-miRNA interaction / CLIP-Seq (1-20) |
• Protein binding site |
Inquire | |
RNAs-protein interaction / RNA-miRNA interaction / CLIP-Seq (Sample size 21-40) |
• Protein binding site |
Inquire | |
RNAs-protein interaction / RNA-miRNA interaction / CLIP-Seq (Sample size 41-60) |
• Protein binding site |
Inquire | |
► DNA-Seq Analysis (3) | |||
Name | Description | Price | |
Whole Genome Sequencing / Exome-Seq / DNA Methylation (Sample size 1-20) |
• Germline and somatic variant calling and annotation |
Inquire | |
Whole Genome Sequencing / Exome-Seq / DNA Methylation (Sample size 21-40) |
• Germline and somatic variant calling and annotation |
Inquire | |
Whole Genome Sequencing / Exome-Seq / DNA Methylation (Sample size 41-60) |
• Germline and somatic variant calling and annotation |
Inquire | |
► Bioinformatics Customized Project (1) | |||
Name | Description | Price | |
Bioinformatics Customized Project |
We will charge by the hour |
Inquire | |
► Data Processing (4) | |||
Name | Description | Price | |
Cell Ranger Analysis of Multi-modal data (Sample Size 1-10) |
GEX+ATAC, GEX+VDJ,GEX+ADT, etc. Fees are applied per project/Lab for shared sequencing runs, unless all data's final destination is the same. |
Inquire | |
Cell Ranger Analysis of Single-modal data (Sample Size 1-10) |
GEX, ATAC, VDJ, etc. Fees are applied per project/Lab for shared sequencing runs, unless all data's final destination is the same. |
Inquire | |
Custom Data Analysis |
The final charges will be calculated based on the number of hours required and are subject to mutual agreement |
Inquire | |
Demultiplexing |
Convert BCL to FASTQ and demultiplex samples. $15 per sample; Capped at $300 per Lab/project for one sequencing run |
Inquire | |
► Letter of Support (1) | |||
Name | Description | Price | |
Letter of Support |
Request for the Core Lab to provide a letter of support for the investigator as requested for the grant proposal. |
Inquire | |
► Single-cell Multi-modal analysis (1) | |||
Name | Description | Price | |
Single-cell Multi-modal analysis |
GEX+TCR, GEX+ATAC, CITE-seq |
Inquire | |
► Spatial Transcriptomics Data Analysis (3) | |||
Name | Description | Price | |
Spatial Transcriptomics Data Analysis (Sample Size: (01-05)/subject) |
|
Inquire | |
Spatial Transcriptomics Data Analysis (Sample Size: (06-10)/subject) |
|
Inquire | |
Spatial Transcriptomics Data Analysis (Sample Size: (11-20)/subject) |
|
Inquire | |
► bulk ATAC, CUT&RUN, CUT&Tag (1) | |||
Name | Description | Price | |
bulk ATAC, CUT&RUN, CUT&Tag |
The fee is per analysis project with up to 15 samples |
Inquire |